If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ), 'gf_id' => 'HOM05D000954', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000954' ), 'data_identifier' => 'HOM05D000954', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000954', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46880' => 'bna', 'A08p09970' => 'bna', 'A10p28690' => 'bna', 'Aa31LG11G2110' => 'aar', 'Aa31LG3G18630' => 'aar', 'Aa31LG4G11560' => 'aar', 'Aa31sc114G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4671' => 'aag', 'Actinidia04847' => 'ach', 'Actinidia04848' => 'ach', 'Actinidia09245' => 'ach', 'Actinidia11598' => 'ach', 'Actinidia12322' => 'ach', 'Actinidia21928' => 'ach', 'Actinidia22326' => 'ach', 'Actinidia28652' => 'ach', 'Actinidia38711' => 'ach', 'Ah.02g113900' => 'amhyb', 'Ah.09g224170' => 'amhyb', 'Ah.16g104690' => 'amhyb', 'AL665U10010' => 'aly', 'AL6G18170' => 'aly', 'AL7G43860' => 'aly', 'AL8G37910' => 'aly', 'Aqoxy3G03566' => 'aox', 'Aqoxy3G03567' => 'aox', 'Aqoxy6G02836' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05VQV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22VPXE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6NYS5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.707XXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Y7YUX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SAY1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92AMW6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3M64I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADI1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AV13EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFNV57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PF6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5KW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2RA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INLG76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRBT4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4D5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N08VCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6KEL7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV3VA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3XFSA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJX8W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6QHPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYC6F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN9XNQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI0RBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YIL5S5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQM2EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZS0DEM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTCB3S' => 'arhy', 'AT5G07830' => 'ath', 'AT5G34940' => 'ath', 'AT5G61250' => 'ath', 'ATR0064G090' => 'atr', 'ATR0064G091' => 'atr', 'ATR0767G083' => 'atr', 'Atru.chr9.274' => 'acertr', 'AUR62003122' => 'cqu', 'AUR62007942' => 'cqu', 'AUR62008491' => 'cqu', 'AUR62011219' => 'cqu', 'AUR62012430' => 'cqu', 'AUR62013261' => 'cqu', 'AUR62021609' => 'cqu', 'AUR62031553' => 'cqu', 'BcaB04g18064' => 'bca', 'BcaC06g32510' => 'bca', 'BcaC06g33169' => 'bca', 'BcaC06g33220' => 'bca', 'BcaC06g33222' => 'bca', 'BcaC07g37679' => 'bca', 'BcaNung06905' => 'bca', 'BolC7t45016H' => 'bol', 'BolC8t48051H' => 'bol', 'BolC9t59645H' => 'bol', 'BraA03t13808Z' => 'bra', 'BraA08t32991Z' => 'bra', 'BraA10t44916Z' => 'bra', 'C07p44930' => 'bna', 'C09p69000' => 'bna', 'CAN.G1340.4' => 'can', 'CAN.G243.20' => 'can', 'CAN.G467.9' => 'can', 'CAN.G479.32' => 'can', 'CAN.G587.26' => 'can', 'CANSAT25G3086' => 'cansat', 'CANSAT64G2901' => 'cansat', 'CANSAT80G1839' => 'cansat', 'CARHR205350' => 'chi', 'CARHR275000' => 'chi', 'CARHR286890' => 'chi', 'Carub.0006s0675' => 'cru', 'Carub.0007s3083' => 'cru', 'Carub.0008s2192' => 'cru', 'Ca_03107_v3' => 'car', 'Ca_13806_v3' => 'car', 'Ca_21640_v3' => 'car', 'Ca_21792_v3' => 'car', 'CBR_g2938' => 'cbr', 'Cc00_g02260' => 'ccan', 'Cc04_g13210' => 'ccan', 'Cc05_g08230' => 'ccan', 'Cc05_g08240' => 'ccan', 'Cc06_g05750' => 'ccan', 'Cc06_g07710' => 'ccan', 'Cc08_g00380' => 'ccan', 'Cc08_g06150' => 'ccan', 'Cc09_g05340' => 'ccan', 'Cc11_g12290' => 'ccan', 'CDE02G4116' => 'cde', 'CDE04G1481' => 'cde', 'CDE05G1924' => 'cde', 'CDE07G1012' => 'cde', 'Cfa002266' => 'cfa', 'Cfa013120' => 'cfa', 'Cfa019296' => 'cfa', 'Cfa021227' => 'cfa', 'Ciclev10007919m.g' => 'ccl', 'Ciclev10010401m.g' => 'ccl', 'Ciclev10019304m.g' => 'ccl', 'Ciclev10033641m.g' => 'ccl', 'CiPaw.03G251700' => 'cil', 'CiPaw.03G251900' => 'cil', 'CiPaw.03G252000' => 'cil', 'CiPaw.03G252100' => 'cil', 'CiPaw.04G177200' => 'cil', 'CiPaw.07G225600' => 'cil', 'CiPaw.08G009400' => 'cil', 'CiPaw.11G049700' => 'cil', 'ClCG00G005800' => 'cla', 'ClCG04G011990' => 'cla', 'ClCG05G006380' => 'cla', 'ClCG05G006390' => 'cla', 'ClCG05G023840' => 'cla', 'ClCG06G015850' => 'cla', 'ClCG07G008900' => 'cla', 'ClCG07G008950' => 'cla', 'ClCG11G003450' => 'cla', 'COL.COLO4_01056' => 'col', 'COL.COLO4_09865' => 'col', 'COL.COLO4_18891' => 'col', 'COL.COLO4_27922' => 'col', 'COL.COLO4_33375' => 'col', 'COL.COLO4_36886' => 'col', 'Cpa.g.sc187.5' => 'cpa', 'Cpa.g.sc277.3' => 'cpa', 'Cpa.g.sc51.103' => 'cpa', 'Cpa.g.sc51.104' => 'cpa', 'Cpa.g.sc51.106' => 'cpa', 'CsaV3_1G002710' => 'csa', 'CsaV3_1G005790' => 'csa', 'CsaV3_2G003320' => 'csa', 'CsaV3_3G015010' => 'csa', 'CsaV3_4G005250' => 'csa', 'CsaV3_5G023580' => 'csa', 'CsaV3_5G033170' => 'csa', 'CSS0004196' => 'camsi', 'CSS0008774' => 'camsi', 'CSS0009476' => 'camsi', 'CSS0013100' => 'camsi', 'CSS0020503' => 'camsi', 'CSS0025883' => 'camsi', 'CSS0029940' => 'camsi', 'CSS0032230' => 'camsi', 'DCAR_004351' => 'dca', 'DCAR_004506' => 'dca', 'DCAR_004510' => 'dca', 'DCAR_006125' => 'dca', 'DCAR_009338' => 'dca', 'DCAR_014916' => 'dca', 'DCAR_017772' => 'dca', 'DCAR_023809' => 'dca', 'DCAR_026017' => 'dca', 'DCAR_031669' => 'dca', 'Dinv10685' => 'din', 'Dinv18196' => 'din', 'Dinv24977' => 'din', 'Dinv34119' => 'din', 'Dinv38779' => 'din', 'Duzib068G1428' => 'dzi', 'Duzib114G0647' => 'dzi', 'Duzib168G0324' => 'dzi', 'Duzib168G0942' => 'dzi', 'Duzib187G0849' => 'dzi', 'Duzib187G2002' => 'dzi', 'Duzib205G0205' => 'dzi', 'ECA232G0231' => 'eca', 'ECA233G3314' => 'eca', 'ECA234G1122' => 'eca', 'ECA236G0553' => 'eca', 'ECA240G2316' => 'eca', 'ECA247G0470' => 'eca', 'EL10Ac2g04180' => 'bvu', 'EL10Ac5g11091' => 'bvu', 'EL10Ac8g18315' => 'bvu', 'EL10Ac8g18763' => 'bvu', 'Eucgr.B00567' => 'egr', 'Eucgr.B03174' => 'egr', 'Eucgr.C02740' => 'egr', 'Eucgr.C02741' => 'egr', 'Eucgr.C02742' => 'egr', 'Eucgr.C04395' => 'egr', 'Eucgr.G02460' => 'egr', 'Eucgr.K02497' => 'egr', 'FAN06G0885' => 'fan', 'FAN07G2390' => 'fan', 'FAN08G2461' => 'fan', 'FAN13G2959' => 'fan', 'FAN15G0552' => 'fan', 'FAN17G2885' => 'fan', 'FAN18G1999' => 'fan', 'FAN19G2179' => 'fan', 'FAN20G1617' => 'fan', 'FAN22G0100' => 'fan', 'FAN22G1160' => 'fan', 'FAN23G3098' => 'fan', 'FAN24G3398' => 'fan', 'FAN27G0704' => 'fan', 'FAN28G0017' => 'fan', 'FvH4_1g02100' => 'fve', 'FvH4_2g28720' => 'fve', 'FvH4_2g28730' => 'fve', 'FvH4_4g30431' => 'fve', 'FvH4_5g14320' => 'fve', 'Glyma.02G114400' => 'gma', 'Glyma.02G114600' => 'gma', 'Glyma.04G164500' => 'gma', 'Glyma.05G023200' => 'gma', 'Glyma.06G200000' => 'gma', 'Glyma.06G256800' => 'gma', 'Glyma.09G091100' => 'gma', 'Glyma.13G163000' => 'gma', 'Glyma.14G139250' => 'gma', 'Glyma.15G197800' => 'gma', 'Glyma.17G076500' => 'gma', 'Glyma.17G108200' => 'gma', 'Gohir.A05G289350' => 'ghi', 'Gohir.A06G052300' => 'ghi', 'Gohir.A08G092300' => 'ghi', 'Gohir.A08G252900' => 'ghi', 'Gohir.A09G003440' => 'ghi', 'Gohir.A09G003460' => 'ghi', 'Gohir.A09G003600' => 'ghi', 'Gohir.A09G015650' => 'ghi', 'Gohir.A09G015701' => 'ghi', 'Gohir.A09G015751' => 'ghi', 'Gohir.A09G015801' => 'ghi', 'Gohir.A09G015851' => 'ghi', 'Gohir.A09G243000' => 'ghi', 'Gohir.A10G224400' => 'ghi', 'Gohir.A10G234400' => 'ghi', 'Gohir.A12G180400' => 'ghi', 'Gohir.D05G290750' => 'ghi', 'Gohir.D06G051300' => 'ghi', 'Gohir.D08G101000' => 'ghi', 'Gohir.D08G274500' => 'ghi', 'Gohir.D09G003180' => 'ghi', 'Gohir.D09G003200' => 'ghi', 'Gohir.D09G014400' => 'ghi', 'Gohir.D09G014500' => 'ghi', 'Gohir.D09G243700' => 'ghi', 'Gohir.D10G236932' => 'ghi', 'Gohir.D10G237500' => 'ghi', 'Gohir.D10G238032' => 'ghi', 'Gohir.D10G246624' => 'ghi', 'Gohir.D12G183100' => 'ghi', 'Gorai.004G108900' => 'gra', 'Gorai.004G293000' => 'gra', 'Gorai.006G004200' => 'gra', 'Gorai.006G004300' => 'gra', 'Gorai.006G004400' => 'gra', 'Gorai.006G004500' => 'gra', 'Gorai.006G021700' => 'gra', 'Gorai.006G267500' => 'gra', 'Gorai.008G196400' => 'gra', 'Gorai.009G305800' => 'gra', 'Gorai.010G059600' => 'gra', 'Gorai.011G271100' => 'gra', 'Gorai.011G271700' => 'gra', 'Gorai.011G284500' => 'gra', 'Gorai.011G285000' => 'gra', 'Gorai.011G285200' => 'gra', 'Gorai.N009100' => 'gra', 'Gorai.N009200' => 'gra', 'Gorai.N009300' => 'gra', 'Gorai.N016700' => 'gra', 'Gorai.N021000' => 'gra', 'GSVIVG01007918001' => 'vvi', 'GSVIVG01012184001' => 'vvi', 'GSVIVG01012851001' => 'vvi', 'GSVIVG01035950001' => 'vvi', 'HanXRQChr02g0035661' => 'han', 'HanXRQChr02g0042521' => 'han', 'HanXRQChr06g0180561' => 'han', 'HanXRQChr06g0180581' => 'han', 'HanXRQChr09g0242671' => 'han', 'HanXRQChr10g0314191' => 'han', 'HanXRQChr11g0343691' => 'han', 'HanXRQChr11g0353741' => 'han', 'HanXRQChr12g0357141' => 'han', 'HanXRQChr13g0403231' => 'han', 'Haze_07677' => 'cav', 'Haze_07678' => 'cav', 'Haze_21487' => 'cav', 'Haze_25452' => 'cav', 'Haze_25453' => 'cav', 'Hma1.2p1_0060F.1_g033340' => 'hma', 'Hma1.2p1_0182F.1_g080210' => 'hma', 'Hma1.2p1_0322F.1_g124920' => 'hma', 'Hma1.2p1_0343F.1_g130790' => 'hma', 'Hma1.2p1_1416F.1_g282080' => 'hma', 'Hma1.2p1_1757F.1_g301090' => 'hma', 'HPP92_010551' => 'vpl', 'HPP92_010859' => 'vpl', 'HPP92_010893' => 'vpl', 'HPP92_016987' => 'vpl', 'HPP92_016988' => 'vpl', 'HPP92_016989' => 'vpl', 'HPP92_017000' => 'vpl', 'HPP92_017001' => 'vpl', 'HPP92_017003' => 'vpl', 'HPP92_017004' => 'vpl', 'HPP92_017523' => 'vpl', 'HPP92_023627' => 'vpl', 'Hund04496' => 'sun', 'Hund09849' => 'sun', 'Hund21591' => 'sun', 'Lalb_Chr07g0178241' => 'lal', 'Lalb_Chr08g0233541' => 'lal', 'Lalb_Chr08g0235161' => 'lal', 'Lalb_Chr10g0098621' => 'lal', 'Lalb_Chr12g0198361' => 'lal', 'Lalb_Chr13g0301351' => 'lal', 'Lalb_Chr13g0302971' => 'lal', 'Lalb_Chr18g0052251' => 'lal', 'Lalb_Chr23g0275881' => 'lal', 'Lalb_Chr23g0275891' => 'lal', 'Lalb_Chr23g0275901' => 'lal', 'Lj1g0011577' => 'lja', 'Lj2g0005750' => 'lja', 'Lj2g0018951' => 'lja', 'Lj3P1031T18' => 'lonja', 'Lj4g0010756' => 'lja', 'Lj4g0024712' => 'lja', 'Lj6g0012399' => 'lja', 'Lj8A723T62' => 'lonja', 'Lj9A469T60' => 'lonja', 'Lj9C703G12' => 'lonja', 'Lsat_1_v5_gn_1_13741' => 'lsa', 'Lsat_1_v5_gn_1_43741' => 'lsa', 'Lsat_1_v5_gn_4_110160' => 'lsa', 'Lsat_1_v5_gn_5_93061' => 'lsa', 'Lsat_1_v5_gn_6_20321' => 'lsa', 'Lsat_1_v5_gn_7_45041' => 'lsa', 'Lsat_1_v5_gn_8_62801' => 'lsa', 'Manes.01G029600' => 'mes', 'Manes.03G012600' => 'mes', 'Manes.05G107950' => 'mes', 'Manes.06G044600' => 'mes', 'Manes.06G087500' => 'mes', 'Manes.14G083500' => 'mes', 'Manes.14G118800' => 'mes', 'Mapoly0016s0141' => 'mpo', 'Mapoly0088s0001' => 'mpo', 'Mapoly0364s0001' => 'mpo', 'Mapoly0968s0001' => 'mpo', 'MBI14_g18755_MAGBIO' => 'mbi', 'MBI14_g31959_MAGBIO' => 'mbi', 'MD02G1019000' => 'mdo', 'MD06G1084000' => 'mdo', 'MD06G1199600' => 'mdo', 'MD14G1208600' => 'mdo', 'MD15G1128700' => 'mdo', 'MD15G1162800' => 'mdo', 'MD16G1063800' => 'mdo', 'Medtr2g451510' => 'mtr', 'Medtr3g023690' => 'mtr', 'Medtr3g023700' => 'mtr', 'Medtr3g023710' => 'mtr', 'Medtr4g109260' => 'mtr', 'Medtr4g109300' => 'mtr', 'Medtr4g116040' => 'mtr', 'Medtr4g116050' => 'mtr', 'Medtr4g116070' => 'mtr', 'Medtr5g043710' => 'mtr', 'Medtr8g091915' => 'mtr', 'Medtr8g091920' => 'mtr', 'MELO3C000198.2' => 'cme', 'MELO3C002010.2' => 'cme', 'MELO3C004477.2' => 'cme', 'MELO3C006697.2' => 'cme', 'MELO3C012138.2' => 'cme', 'MELO3C017206.2' => 'cme', 'MELO3C017550.2' => 'cme', 'MELO3C032611.2' => 'cme', 'Migut.A00019' => 'egut', 'Migut.C00060' => 'egut', 'Migut.E00058' => 'egut', 'Migut.I00338' => 'egut', 'Migut.J01186' => 'egut', 'Migut.J01247' => 'egut', 'Migut.J01248' => 'egut', 'Migut.K00400' => 'egut', 'Migut.L01213' => 'egut', 'MSTRG.11348' => 'ama', 'MSTRG.22968' => 'ama', 'MSTRG.26019' => 'ama', 'MSTRG.26329' => 'ama', 'Nitab4.5_0000334g0300' => 'nta', 'Nitab4.5_0000704g0120' => 'nta', 'Nitab4.5_0000770g0070' => 'nta', 'Nitab4.5_0001688g0030' => 'nta', 'Nitab4.5_0002881g0070' => 'nta', 'Nitab4.5_0003587g0060' => 'nta', 'Nitab4.5_0004304g0070' => 'nta', 'Nitab4.5_0004511g0080' => 'nta', 'Nitab4.5_0006673g0030' => 'nta', 'Nitab4.5_0010790g0020' => 'nta', 'Nn2g15784' => 'nnu', 'Nn3g17382' => 'nnu', 'Nn3g17699' => 'nnu', 'Nn4g23356' => 'nnu', 'Nn4g23357' => 'nnu', 'Nn8g39625' => 'nnu', 'Oeu012221.1' => 'oeu', 'Oeu015297.1' => 'oeu', 'Oeu052173.1' => 'oeu', 'Oeu061161.1' => 'oeu', 'Oeu062483.3' => 'oeu', 'Os02g0802200' => 'osa', 'Os03g0211700' => 'osa', 'Os06g0179000' => 'osa', 'Os07g0598400' => 'osa', 'Os12g0578400' => 'osa', 'Peaxi162Scf00009g01530' => 'pax', 'Peaxi162Scf00013g00533' => 'pax', 'Peaxi162Scf00088g00817' => 'pax', 'Peaxi162Scf00201g00025' => 'pax', 'Peaxi162Scf00314g00029' => 'pax', 'PGR044G1012' => 'pgr', 'PGR044G2619' => 'pgr', 'PGR083G2264' => 'pgr', 'PGR102G1563' => 'pgr', 'PGR102G2130' => 'pgr', 'PGR119G1394' => 'pgr', 'PGSC0003DMG400011026' => 'stu', 'PGSC0003DMG400028325' => 'stu', 'PGSC0003DMG400030715' => 'stu', 'PGSC0003DMG400033053' => 'stu', 'PGSC0003DMG402024654' => 'stu', 'Phvul.002G081000' => 'pvu', 'Phvul.003G171800' => 'pvu', 'Phvul.003G186600' => 'pvu', 'Phvul.009G190797' => 'pvu', 'Phvul.009G212400' => 'pvu', 'Potri.006G062200' => 'ptr', 'Potri.010G160800' => 'ptr', 'Potri.015G049100' => 'ptr', 'Potri.018G024200' => 'ptr', 'Potri.018G121500' => 'ptr', 'Pp3c10_17980' => 'ppa', 'Pp3c12_23710' => 'ppa', 'Pp3c22_10580' => 'ppa', 'Pp3c9_1510' => 'ppa', 'Prupe.1G282800' => 'ppe', 'Prupe.1G483900' => 'ppe', 'Prupe.5G200500' => 'ppe', 'Prupe.5G200800' => 'ppe', 'Prupe.7G252000' => 'ppe', 'Psat1g021080' => 'psa', 'Psat4g034840' => 'psa', 'Psat4g048520' => 'psa', 'Psat7g133320' => 'psa', 'PSO017G4598' => 'pso', 'PSO063G6416' => 'pso', 'PSO210G7159' => 'pso', 'PSO409G0022' => 'pso', 'PSO478G4458' => 'pso', 'PSO832G2658' => 'pso', 'QL02p021088' => 'qlo', 'QL02p090602' => 'qlo', 'QL10p018645' => 'qlo', 'QL10p018652' => 'qlo', 'QL10p035322' => 'qlo', 'QL10p036986' => 'qlo', 'RcHm_v2.0_Chr2g0087151' => 'rch', 'RcHm_v2.0_Chr2g0148001' => 'rch', 'RcHm_v2.0_Chr3g0493791' => 'rch', 'RcHm_v2.0_Chr4g0438741' => 'rch', 'RcHm_v2.0_Chr5g0048021' => 'rch', 'RcHm_v2.0_Chr6g0269401' => 'rch', 'RcHm_v2.0_Chr6g0270651' => 'rch', 'RcHm_v2.0_Chr6g0297501' => 'rch', 'RcHm_v2.0_Chr7g0182491' => 'rch', 'RcHm_v2.0_Chr7g0182501' => 'rch', 'RcHm_v2.0_Chr7g0182571' => 'rch', 'Rhsim01G0050300' => 'rsi', 'Rhsim01G0055300' => 'rsi', 'Rhsim02G0203600' => 'rsi', 'Rhsim08G0149400' => 'rsi', 'Rhsim12G0134400' => 'rsi', 'Rhsim12G0152700' => 'rsi', 'Sabra06G0044800' => 'sbr', 'Sabra18G0026700' => 'sbr', 'Sabra18G0101900' => 'sbr', 'SalBow1G0080' => 'sbo', 'SalBow2G0382' => 'sbo', 'SalBow2G3329' => 'sbo', 'SalBow4G2120' => 'sbo', 'SalBow5G3161' => 'sbo', 'SalBow8G0815' => 'sbo', 'Sc04g0003010' => 'sci', 'Sc06g0000540' => 'sci', 'Sc09g0010300' => 'sci', 'Sc14g0008020' => 'sci', 'Sc18g0000160' => 'sci', 'Sed0001730' => 'sed', 'Sed0009286' => 'sed', 'Sed0012699' => 'sed', 'Sed0015766' => 'sed', 'Sed0016842' => 'sed', 'Sed0016922' => 'sed', 'SEGI_00487' => 'sgi', 'SEGI_06520' => 'sgi', 'SEGI_17004' => 'sgi', 'SEGI_26819' => 'sgi', 'SEGI_28751' => 'sgi', 'SEGI_33208' => 'sgi', 'SEGI_34889' => 'sgi', 'SEGI_35436' => 'sgi', 'SGA_v2.0_scaffold115G32118' => 'sas', 'SGA_v2.0_scaffold20G09097' => 'sas', 'SGA_v2.0_scaffold229G43337' => 'sas', 'SGA_v2.0_scaffold229G43339' => 'sas', 'SGA_v2.0_scaffold252G45083' => 'sas', 'SGA_v2.0_scaffold252G45089' => 'sas', 'SGA_v2.0_scaffold252G45090' => 'sas', 'SGA_v2.0_scaffold252G45092' => 'sas', 'SGA_v2.0_scaffold252G45093' => 'sas', 'SGA_v2.0_scaffold252G45094' => 'sas', 'SGA_v2.0_scaffold25G10963' => 'sas', 'SGA_v2.0_scaffold45G17064' => 'sas', 'SGA_v2.0_scaffold542G52817' => 'sas', 'SGA_v2.0_scaffold71G23730' => 'sas', 'SHI08949' => 'shi', 'SMO172G0021' => 'smo', 'SMO172G0160' => 'smo', 'SMO259G0023' => 'smo', 'Solyc03g115500.3' => 'sly', 'Solyc05g012540.4' => 'sly', 'Solyc06g069580.3' => 'sly', 'Solyc07g007550.3' => 'sly', 'Solyc10g085220.3' => 'sly', 'Sopen03g034500' => 'spe', 'Sopen05g007370' => 'spe', 'Sopen06g026880' => 'spe', 'Sopen07g003550' => 'spe', 'Sopen10g034710' => 'spe', 'Sp2g24480' => 'spa', 'Sp6g35100' => 'spa', 'Sp7g07330' => 'spa', 'TAR374G0889' => 'tar', 'TAR622G1407' => 'tar', 'TAR625G0017' => 'tar', 'TAR626G1376' => 'tar', 'TAR629G0970' => 'tar', 'TAR636G2379' => 'tar', 'TAR676G0005' => 'tar', 'THA.LOC104808955' => 'tha', 'THA.LOC104818330' => 'tha', 'THA.LOC104823068' => 'tha', 'Thecc.02G335200' => 'tca', 'Thecc.03G096800' => 'tca', 'Thecc.09G021300' => 'tca', 'Thecc.09G136700' => 'tca', 'Thhalv10003449m.g' => 'esa', 'Thhalv10003960m.g' => 'esa', 'Thhalv10013186m.g' => 'esa', 'TPR.G12283' => 'tpr', 'TPR.G1734' => 'tpr', 'TPR.G2014' => 'tpr', 'TPR.G24436' => 'tpr', 'TPR.G29936' => 'tpr', 'TPR.G30358' => 'tpr', 'TPR.G35094' => 'tpr', 'TPR.G7982' => 'tpr', 'TPR.G8002' => 'tpr', 'TWI15G0507' => 'twi', 'TWI34G0883' => 'twi', 'TWI34G1918' => 'twi', 'TWI60G0777' => 'twi', 'TWI79G1108' => 'twi', 'TWI81G0546' => 'twi', 'TWI81G0761' => 'twi', 'unitig_22.g5653' => 'ugi', 'unitig_746.g26856' => 'ugi', 'unitig_748.g8274' => 'ugi', 'vmacro04254' => 'vma', 'vmacro07746' => 'vma', 'vmacro11195' => 'vma', 'vmacro16372' => 'vma', 'vmacro16516' => 'vma', 'vmacro17587' => 'vma', 'vmacro22983' => 'vma', 'VMungo0331G1143' => 'vmu', 'VMungo0464G2074' => 'vmu', 'VMungo1215G2038' => 'vmu', 'VMungo1215G2137' => 'vmu', 'VMungo1215G2709' => 'vmu', 'VMungo1309G0007' => 'vmu', 'VMungo1309G0613' => 'vmu', 'Zm00001eb008440' => 'zma', 'Zm00001eb029720' => 'zma', 'Zm00001eb136200' => 'zma', 'Zm00001eb155220' => 'zma', 'Zm00001eb192160' => 'zma', 'Zm00001eb192170' => 'zma', 'Zm00001eb192180' => 'zma', 'Zm00001eb258100' => 'zma', 'Zm00001eb281850' => 'zma', 'Zm00001eb375030' => 'zma' ) $gf_id = 'HOM05D000954' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000954' ) $data_identifier = 'HOM05D000954' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 30, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 3, 'bra' => (int) 3, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 30, 'gra' => (int) 21, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 12, 'sun' => (int) 3, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 3, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 14, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb375030' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1